| condmergefit |
Perform tests to determine whether individual polymorphisms could have given rise to a QTL |
| epistasis |
Analysis of Epistasis between Markers |
| epistasispair |
Analysis of Epistasis between Markers |
| fastmergefit |
Perform tests to determine whether individual polymorphisms could have given rise to a QTL |
| gaussian.fn |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gaussian.gr |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gaussian.init |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gaussian.iterate |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gaussian.loop |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gaussian.null |
Fit a Gaussian Mixture Model to an object returned by happy() |
| gfit |
Fit a Gaussian Mixture Model to an object returned by happy() |
| happy |
Quantitative Trait Locus analysis in Heterogeneous Stocks |
| happy.matrices |
Quantitative Trait Locus analysis in Heterogeneous Stocks |
| happy.save |
Quantitative Trait Locus analysis in Heterogeneous Stocks |
| happyplot |
Plotting functions for happy model fits |
| hdesign |
Extract design matrix or genotypes for a specific marker interval from a happy object |
| hfit |
Fit a model to an object returned by happy() |
| hfit.sequential |
Fit a model to an object returned by happy() |
| hgenotype |
Extract design matrix or genotypes for a specific marker interval from a happy object |
| hprob |
Extract design matrix or genotypes for a specific marker interval from a happy object |
| introduction |
Quantitative Trait Locus analysis in Heterogeneous Stocks |
| load.genome |
Save HAPPY design matrices and genotypes to disk for rapid reloading |
| load.markers |
Save HAPPY design matrices and genotypes to disk for rapid reloading |
| mergedpositionmatrix |
Construct matrices used to merge together founder strains |
| mergefit |
Perform tests to determine whether individual polymorphisms could have given rise to a QTL |
| mergelist |
Create an object descrbing how to merge strains together |
| mergematrices |
Construct matrices used to merge together founder strains |
| mergeplot |
Plotting functions for happy model fits |
| mergeprepare |
Perform tests to determine whether individual polymorphisms could have given rise to a QTL |
| normalise |
Fit a model to an object returned by happy() |
| pfit |
Fit a model to an object returned by happy() |
| save.genome |
Save HAPPY design matrices and genotypes to disk for rapid reloading |
| save.happy |
Save HAPPY design matrices and genotypes to disk for rapid reloading |
| the.chromosomes |
Save HAPPY design matrices and genotypes to disk for rapid reloading |
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)